WebApr 12, 2024 · A DNAStringSet is one dimensional, so it should only take a single subscript. As a list, it is also hierarchical. The GRanges subscripting is essentially a shortcut for a "nested" subscript (like looping x [seqnames], extracting the corresponding range). A hierarchical, one-dimensional subscript. That's exactly what I need to know to.
read_vcfs_as_granges : Read VCF files into a GRangesList
WebDescription. A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. WebGrange syndrome is a rare condition that primarily affects the blood vessels. It is characterized by narrowing (stenosis) or blockage (occlusion) of arteries that supply … how many stores does petstock have
how to extract promoter regions and detect motif ... - Bioconductor
WebNov 8, 2024 · con: A path, URL or BigWigFile object. Connections are not supported. For the functions ending in .bw, the file format is indicated by the function name.For the export and import methods, the format must be indicated another way. If con is a path, or URL, either the file extension or the format argument needs to be “bigWig” or “bw”.. object: The … WebNov 14, 2024 · Bioconductor / MutationalPatterns / read_vcfs_as_granges: Read VCF files into a GRangesList read_vcfs_as_granges: Read VCF files into a GRangesList In … WebThe ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data … DOI: 10.18129/B9.bioc.TCGAbiolinks TCGAbiolinks: An R/Bioconductor … Manipulation of SQLite-based annotations in Bioconductor. Bioconductor version: … Bioconductor version: Release (3.16) RcisTarget identifies transcription factor … DOI: 10.18129/B9.bioc.ChIPseeker ChIPseeker for ChIP peak Annotation, … This package provides a client for the Bioconductor AnnotationHub web … DOI: 10.18129/B9.bioc.KEGGREST Client-side REST access to the Kyoto … Bioconductor version: Release (3.16) Defines a S4 class for storing data from … DOI: 10.18129/B9.bioc.BiocParallel Bioconductor facilities for parallel … Bioconductor version: Release (3.16) Analyze and visualize Mutation … Bioconductor version: Release (3.16) The package provides functions to create … how many stores does publix have 2022